Here is a list of all files with brief descriptions:

doxygen
src
diagnostics
CovarianceMatrixMath.H
DiagnosticOutput.cpp
DiagnosticOutput.H
EmittanceInvariants.cpp
EmittanceInvariants.H
FilePrefix.cpp
FilePrefix.H
LinearMap.cpp
LinearMap.H
NonlinearLensInvariants.H
ReducedBeamCharacteristics.cpp
ReducedBeamCharacteristics.H
elements
diagnostics
AdditionalProperties.cpp
BeamMonitor.cpp
BeamMonitor.H
openPMD.cpp
openPMD.H
mixin
alignment.H
beamoptic.H
dynamicdata.H
lineartransport.H
named.H
nofinalize.H
pipeaperture.H
spintransport.H
thick.H
thin.H
transformation
Insert.cpp
Insert.H
All.H
Aperture.cpp
Aperture.H
Buncher.cpp
Buncher.H
CFbend.cpp
CFbend.H
ChrDrift.cpp
ChrDrift.H
ChrPlasmaLens.cpp
ChrPlasmaLens.H
ChrQuad.cpp
ChrQuad.H
ChrUniformAcc.cpp
ChrUniformAcc.H
ConstF.cpp
ConstF.H
DipEdge.cpp
DipEdge.H
Drift.cpp
Drift.H
Empty.H
ExactCFbend.cpp
ExactCFbend.H
ExactDrift.cpp
ExactDrift.H
ExactMultipole.cpp
ExactMultipole.H
ExactQuad.cpp
ExactQuad.H
ExactSbend.cpp
ExactSbend.H
Kicker.cpp
Kicker.H
LinearMap.cpp
LinearMap.H
Marker.H
Multipole.cpp
Multipole.H
NonlinearLens.cpp
NonlinearLens.H
PlaneXYRot.cpp
PlaneXYRot.H
PolygonAperture.cpp
PolygonAperture.H
Programmable.cpp
Programmable.H
PRot.cpp
PRot.H
Quad.cpp
Quad.H
QuadEdge.cpp
QuadEdge.H
RFCavity.cpp
RFCavity.H
Sbend.cpp
Sbend.H
ShortRF.cpp
ShortRF.H
SoftQuad.cpp
SoftQuad.H
SoftSol.cpp
SoftSol.H
Sol.cpp
Sol.H
Source.cpp
Source.H
SpinMap.cpp
SpinMap.H
TaperedPL.cpp
TaperedPL.H
ThinDipole.cpp
ThinDipole.H
envelope
spacecharge
Elliptic_Integral.cpp
Elliptic_Integral.H
EnvelopeSpaceChargePush.cpp
EnvelopeSpaceChargePush.H
initialization
Algorithms.cpp
Algorithms.H
AmrCoreData.cpp
AmrCoreData.H
AmrCoreData_fwd.H
InitAmrCore.cpp
InitAmrCore.H
InitAMReX.cpp
InitAMReX.H
InitDistribution.cpp
InitDistribution.H
InitElement.cpp
InitMeshRefinement.cpp
InitMeshRefinement.H
InitParser.cpp
InitParser.H
Validate.cpp
Warnings.cpp
particles
distribution
All.H
Empty.H
Gaussian.H
Kurth4D.H
Kurth6D.H
KVdist.H
Semigaussian.H
SpinvMF.H
Thermal.H
Triangle.H
Waterbag.H
integrators
Integrators.H
spacecharge
Deposit1D.cpp
Deposit1D.H
ForceFromSelfFields.cpp
ForceFromSelfFields.H
GatherAndPush.cpp
GatherAndPush.H
Gauss2p5dPush.cpp
Gauss2p5dPush.H
Gauss3dPush.cpp
Gauss3dPush.H
HandleSpacecharge.cpp
HandleSpacecharge.H
PoissonSolve.cpp
PoissonSolve.H
transformation
CoordinateTransformation.cpp
CoordinateTransformation.H
ToFixedS.H
ToFixedT.H
wakefields
ChargeBinning.cpp
ChargeBinning.H
CSRBendElement.H
HandleISR.H
HandleWakefield.H
ISRBendElement.H
ISRPush.cpp
ISRPush.H
WakeConvolution.cpp
WakeConvolution.H
WakePush.cpp
WakePush.H
ChargeDeposition.cpp
ChargeDeposition.H
CollectLost.cpp
CollectLost.H
CovarianceMatrix.H
ImpactXParticleContainer.cpp
ImpactXParticleContainer.H
ParticleBoundary.cpp
ParticleBoundary.H
Push.cpp
Push.H
PushAll.H
ReferenceParticle.H
SplitEqually.cpp
SplitEqually.H
python
distribution.cpp
elements.cpp
flatten_rho.cpp
ImpactX.cpp
ImpactXParticleContainer.cpp
Iterator.H
lattice.cpp
pyImpactX.cpp
pyImpactX.H
ReferenceParticle.cpp
transformation.cpp
WakeConvolution.cpp
tracking
envelope.cpp
particles.cpp
particles.H
reference.cpp
TrackingDirection.H
TrackingState.H
Hooks.cpp
ImpactX.cpp
ImpactX.H
main.cpp